Hugo Armando Guillen-Ramirez

Department of Visceral Surgery and Medicine, Inselspital, Bern University Hospital, University of Bern, Switzerland

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I am a Postdoctoral Researcher in Medical Data Science at the University of Bern, developing health risk prediction models from Real-World Data (RWD) to generate Real-World Evidence (RWE).

I hold a PhD in Computer Science and I am an MSCA Postdoctoral Fellow alumni, with over seven years of research experience in machine learning, bioinformatics, and genomics.

My current research focuses on AI-driven healthcare prediction models, integrating causal inference, explainable AI, and federated learning to enhance model reliability and enable clinical decision support.

news

Jan 15, 2026 New paper in Scientific Reports on LLM-augmented embeddings for cross-lingual mapping of medical procedure terms. doi:10.1038/s41598-025-34778-7
Nov 1, 2025 New paper in JAMIA on explainable machine learning and strategic data imputation for postoperative-infection prediction. doi:10.1093/jamia/ocaf145
Aug 15, 2025 New paper in Open Forum Infectious Diseases on preoperative enterosignatures predicting surgical-site infections after abdominal surgery. doi:10.1093/ofid/ofaf549

selected publications

  1. Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities
    Roberta Esposito, Taisia Polidori, Dominik F. Meise, and 26 more authors
    Cell Genomics, Sep 2022
  2. Tumour mutations in long noncoding RNAs enhance cell fitness
    Roberta Esposito, Andrés Lanzós, Tina Uroda, and 30 more authors
    Nature Communications, Jun 2023
  3. Functional identification of \textitcis -regulatory long noncoding RNAs at controlled false discovery rates
    Bhavya Dhaka, Marc Zimmerli, Daniel Hanhart, and 12 more authors
    Nucleic Acids Research, Apr 2024
  4. Prediction of postoperative infections by strategic data imputation and explainable machine learning
    Hugo Guillen-Ramirez, Daniel Sanchez-Taltavull, Stéphanie Perrodin, and 5 more authors
    Journal of the American Medical Informatics Association, Nov 2025
  5. End-of-surgery prediction of postoperative infectious complications from intraoperative vital-sign dynamics
    Tobias U. Blatter, Yves Wintsch, Karen Triep, and 3 more authors
    npj Digital Medicine, May 2026
  6. LLM-augmented semantic embeddings enable Cross-Lingual mapping of medical procedure terms
    Hugo Guillen-Ramirez, Karen Triep, Christophe Gaudet-Blavignac, and 3 more authors
    Scientific Reports, Jan 2026