Publications

2026

  1. LLM-augmented semantic embeddings enable Cross-Lingual mapping of medical procedure terms
    Hugo Guillen-Ramirez, Karen Triep, Christophe Gaudet-Blavignac, and 3 more authors
    Scientific Reports, Jan 2026

2025

  1. Prediction of postoperative infections by strategic data imputation and explainable machine learning
    Hugo Guillen-Ramirez, Daniel Sanchez-Taltavull, Stéphanie Perrodin, and 5 more authors
    Journal of the American Medical Informatics Association, Nov 2025
  2. Preoperative Enterosignatures Predict Surgical Site Infections After Abdominal Surgery
    Simone N Zwicky, Daniel Spari, Daniel Rodjakovic, and 3 more authors
    Open Forum Infectious Diseases, Aug 2025

2024

  1. Influence of patient characteristics on microbial composition in surgical-site infections: insights from national surveillance study
    Sarah Peisl, Hugo Guillen-Ramirez, Daniel Sánchez-Taltavull, and 3 more authors
    The British Journal of Surgery, Jun 2024
  2. Functional identification of \textitcis -regulatory long noncoding RNAs at controlled false discovery rates
    Bhavya Dhaka, Marc Zimmerli, Daniel Hanhart, and 12 more authors
    Nucleic Acids Research, Apr 2024

2023

  1. Tumour mutations in long noncoding RNAs enhance cell fitness
    Roberta Esposito, Andrés Lanzós, Tina Uroda, and 30 more authors
    Nature Communications, Jun 2023

2022

  1. Multi-hallmark long noncoding RNA maps reveal non-small cell lung cancer vulnerabilities
    Roberta Esposito, Taisia Polidori, Dominik F. Meise, and 26 more authors
    Cell Genomics, Sep 2022

2021

  1. Enhancing CRISPR deletion via pharmacological delay of DNA-PKcs
    Núria Bosch-Guiteras, Tina Uroda, Hugo A. Guillen-Ramirez, and 7 more authors
    Genome Research, Mar 2021

2020

  1. Automatic construction of molecular similarity networks for visual graph mining in chemical space of bioactive peptides: an unsupervised learning approach
    Longendri Aguilera-Mendoza, Yovani Marrero-Ponce, César R. García-Jacas, and 4 more authors
    Scientific Reports, Oct 2020

2019

  1. Graph-based data integration from bioactive peptide databases of pharmaceutical interest: toward an organized collection enabling visual network analysis
    Longendri Aguilera-Mendoza, Yovani Marrero-Ponce, Jesus A Beltran, and 3 more authors
    Bioinformatics, Nov 2019
  2. Particle size distribution from extinction and absorption data of metallic nanoparticles
    J. Gabriela Calvillo-Vázquez, Hugo A. Guillén-Ramírez, Melissa DiazDuarte-Rodríguez, and 2 more authors
    Applied Optics, Dec 2019

2018

  1. Classification of riboswitch sequences using k-mer frequencies
    Hugo A. Guillén-Ramírez, and Israel M. Martínez-Pérez
    Biosystems, Dec 2018
  2. A benchmark of heart sound classification systems based on sparse decompositions
    Roilhi Frajo Ibarra-Hernández, Nancy Bertin, Miguel Angel Alonso-Arévalo, and 1 more author
    In 14th International Symposium on Medical Information Processing and Analysis, Dec 2018

2017

  1. Accurate classification of immunomodulatory RNA sequences
    Hugo A. Guillen-Ramirez, Jose Colbes, Carlos A. Brizuela, and 1 more author
    In 2017 International Joint Conference on Neural Networks (IJCNN), May 2017

2013

  1. Improving an evolutionary multi-objective algorithm for the biclustering of gene expression data
    Carlos A. Brizuela, Jorge E. Luna-Taylor, Israel Martinez-Perez, and 3 more authors
    In 2013 IEEE Congress on Evolutionary Computation, Jun 2013